Although the Republic of Indonesia had conducted number of gender equality programmes, it is still remaining as one of the highest inequality index in the far east. This shows that males are still dominant in each indicator, whether employment, education or representation in parliament. The importance of women's decision-making issues has been recognised within the framework of the millennium development goals. One of the indicators to monitor the Millennium Development Goal 3 on gender equality. One of the skill requirements for a leader that can be a benchmark of leadership effectiveness is decision making. The research was conducted at Universitas Narotama, Surabaya, while for survey and data collection was done at Ministry of Research and Technology Dikti and Kopertis VII East Java. One of the skill requirements for a leader that can be a benchmark of leadership effectiveness is decision making as one of the methodology content. The paper will provide an insight research on finding the impact of inequality gender within the University in Indonesia focusing on the management leadership. The paper will summaries and provide a recommendation to the Ministry of the Higher Education of Indonesia.